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  • Genomic, mapping and molecular markers important publications
  • Saha D, Rana RS, Chakraborty S, Datta S, Kumar AA, Chakraborty AK, Karmakar PG (2017) Development of a set of SSR markers for genetic polymorphism detection and interspecific hybrid jute breeding. The Crop Journal, 5(5): 416-429.
  • P Satya, A Chakraborty, S Jana, S Majumdar, M Karan, D Sarkar, S Datta, Mitra J, Kar CS, Karmakar PG, Singh NK (2017). Identification of genic SSRs in jute (Corchorus capsularis, Malvaceae) and development of markers for phenylpropanoid biosynthesis genes and regulatory genes. Plant Breeding, 136 (5), 784-797.
  • Yang Z, Yan A, Lu R, Dai Z, Tang Q, Cheng C, Xu Y, Su J. (2017) De novo transcriptome sequencing of two cultivated jute species under salinity stress. PLoS One, 12(10):e0185863.
  • Tao A, Huang L, Wu G, Afshar RK, Qi J, Xu J, Fang P, Lin L, Zhang L, Lin P (2017). High-density genetic map construction and QTLs identification for plant height in white jute (Corchorus capsularis L.) using specific locus amplified fragment (SLAF) sequencing. BMC Genomics, 18, 355.
  • Sarkar D, Mahato AK, Satya P, Kundu A, Singh S, Jayaswal PK, Singh A, Bahadur K, Pattnaik S, Singh N, Chakraborty A, Mandal NA, Das D, Basu T, Sevanthi AM, Saha D, Datta S, Kar CS, Mitra J, Datta K, Karmakar PG, Sharma TR, Mohapatra T, Singh NK (2017). The draft genome of Corchorus olitorius cv. JRO-524 (Navin). Genomics Data, 12: 151–154.
  • Islam MS, Saito JA, Emdad EM, Ahmed B, Islam MM, Halim A, et al. (2017). Comparative genomics of two jute species and insight into fibre biogenesis. Nature Plants, 3:16223.
  • Sarkar D, Satya P, Mandal NA, Das D, Karmakar PG, Singh NK (2016). Jute Genomics: Emerging Resources and Tools for Molecular Breeding. In: Ramawat K, Ahuja M (eds) Fiber Plants. Sustainable Development and Biodiversity, vol 13. pp. 155-200.
  • Zhang L, Ming R, Zhang J, Tao A, Fang P, Qi J.(2015). De novo transcriptome sequence and identification of major bast-related genes involved in cellulose biosynthesis in jute (Corchorus capsularis L.). BMC Genomics. 16: 1062. doi: 10.1186/s12864-015-2256-z.
  • Zhang L, Li Y, Tao A, Fang P, Qi J (2015). Development and Characterization of 1,906 EST-SSR Markers from Unigenes in Jute (Corchorus spp.). PLoS One. 10(10):e0140861. doi: 10.1371/journal.pone.0140861.
  • Chakraborty A, Sarkar D,Satya P,Karmakar PG, Singh NK (2015). Pathways associated with lignin biosynthesis in lignomaniac jute fibres. Mol Genet Genomics.DOI 10.1007/s00438-015-1013-y.
  • KunduA,Chakraborty A,Mandal NA, Das D, Karmakar PG, Singh NK, Sarkar D (2015). A restriction-site-associated DNA (RAD) linkage map, comparative genomics and identification of QTL for histological fibre content coincident with those for retted bastfibre yield and its major components in jute (Corchorusolitorius L., Malvaceae s. l.) Molecular Breeding. 35:19.
  • Zhang L, Yuan M, Tao A, Xu J, Lin L, Fang P, Qi J. (2015) Genetic Structure and Relationship Analysis of an Association Population in Jute (Corchorus spp.) Evaluated by SSR Markers. PLoS One. 2015 Jun 2;10(6):e0128195. doi: 10.1371/journal.pone.0128195.
  • Biswas C, Dey P, Karmakar PG, Satpathy S (2015). Discovery of large-scale SNP markers and construction of linkage map in a RIL population of jute (Corchoruscapsularis). Molecular Breeding 35 (5), 1-10
  • Joshi A, Paria P, Basu A (2015). Comparative assemblage of single copy expressed sequence tag loci in nucleolar organizing chromosomes of C. capsularis and C. olitorius. ActaPhysiologiaePlantarum. 37:161. doi:10.1007/s11738-015-1908-6.
  • Samanta P,Sadhukhan S,Basu A (2015). Identification of differentially expressed transcripts associated with bastfibre development in Corchoruscapsularis by suppression subtractive hybridization. Planta. 241:371–385.
  • Saha P, Sarkar D, Kundu A, Majumder S, Datta SK, Datta K (2014). Karyotype analysis and chromosomal evolution in Asian species of Corchorus (Malvaceae s. l.). Genet Resour Crop Evol 61: 1173-1188.
  • Topdar N, Kundu A, Sinha MK, Sarkar D, Das M, Banerjee S, Kar CS, Satya P, Balyan HS, Mahapatra BS, Gupta PK (2013). A complete genetic linkage map and QTL analyses for bastfibre quality traits, yield and yield components in jute (Corchorusolitorius L.). Cytol Genet 47:129-137.
  • Kundu A, Topdar N, Sarkar D, Sinha MK, Ghosh A, Banerjee S, Das M, Balyan HS, Mahapatra BS, Gupta PK (2013). Origins of white (Corchoruscapsularis L.) and dark (C. olitorius L.) jute: a reevaluation based on nuclear and chloroplast microsatellites. J Plant BiochemBiotechnol 22:372-381.
  • Kundu A, Sarkar D, Mandal NA, Sinha MK, Mahapatra BS (2012). A secondary phloic (bast) fibre-shy (bfs) mutant of dark jute (Corchorusolitorius L.) develops lignified fibre cells but is defective in cambial activity. Plant Growth Regul 67:45-55.
  • Das M, Banerjee S, Topdar N, Kundu A, Mir RR, Sarkar D, Sinha MK, Balyan HS, Gupta PK (2012). QTL identification for molecular breeding of fibre yield and fibre quality traits in jute.
  • Kundu A, Sarkar D, Bhattacharjee A, Topdar N, Sinha MK, Mahapatra BS (2011). A simple ethanol wash of the tissue homogenates recovers high-quality genomic DNA from Corchorus species characterized by highly acidic and proteinaceousmucilages.
  • Das M, Banerjee S, Topdar N, Kundu A, Sarkar D, Sinha MK, Balyan HS, Gupta PK (2011). Development of large-scale AFLP markers in jute. J Plant BiochemBiotechnol 20:270-275.
  • Sarkar D, Kundu A, Saha A, Mondal NA, Sinha MK, Mahapatra BS (2011). First nuclear DNA amounts in diploid (2n = 2x = 14) Corchorus spp. by flow cytometry: genome sizes in the cultivated jute species (C. capsularis L. and C. olitorius L.) are ~300 % smaller than the reported estimate of 1100–1350 Mb. Caryologia 64:147-153.
  • Mir RR, Banerjee S, Das M, Gupta V, Tyagi AK, Sinha MK, Balyan HS, Gupta PK (2009). Development and characterization of large-scale simple sequence repeats in jute. Crop Sci 49:1687-1694.
  • Roy A, Bandyopadhyay A, Mahapatra AK, Ghosh SK, Singh NK, Bansal KC, Koundal KR, Mohapatra T (2006). Evaluation of genetic diversity in jute (Corchorus species) using STMS, ISSR and RAPD markers. Plant Breed 125:292-297.
  • Swaminathan MS, Iyer RD (1961). Skewed recombination in a rare interspecific jute hybrid. Nature 192:893-894.
  • List of References on Jute Biotechnology important publications
  • Genetic transformation of cultivated jute (Corchoruscapsularis L.) by particle bombardment using apical meristem tissueand development of stable transgenic plant.
  • Bhattacharyya J, Chakraborty A, Roy S, Pradhan S, Mitra J, Chakraborty M, Manna A,SikdarN,ChakrabortyS, Sen SK. (2015). Genetic transformation of cultivated jute (Corchoruscapsularis L.) by particle bombardment using apical meristem tissueand development of stable transgenic plant. Plant Cell Tiss Organ Cult. 121:311–324.
  • Saha P, Datta K, Majumder S, Sarkar C, China SP, Sarkar SN, Sarkar D, Datta SK. (2014). Agrobacterium mediated genetic transformation of commercial jute cultivar Corchoruscapsularis cv. JRC 321 using shoot tip explants. Plant Cell Tiss Organ Cult. 118:313–326.
  • Amin MN, Khatun A, Bhuiyan MSR, Sayed MA, Khandker SR. (2012). Genetic transformation in white jute through Agrobacterium and salinity screening of transgenic plant. Bangladesh J Agric Res 37:97–107.
  • Bharadwaj P, Beena MR, Sinha MK, KirtiPB. (2011). In vitro regeneration and optimization of conditions for Agrobacterium mediated transformation in jute, Corchoruscapsularis. J Plant BiochemBiotechnol. 20:39-46
  • Chattopadhyay T, Roy S, Mitra A, Maiti MK (2010). Development of a transgenic hairy root system in jute (Corchoruscapsularis L.) with gusA reporter gene through Agrobacterium rhizogenes mediated co-transformation. Plant Cell Rep. 30:485–493.
  • Islam MS, Huda KMK, Mahmud F, Banu SA, Wang MH (2009). Regeneration and genetic transformation of Tossa Jute (Corchorusolitorius L.). Aust J Crop Sci. 3:287-293.
  • Sarker RH, Al-Amin GM, Hassan F, Hoque MI (2008). Agrobacterium-mediated genetic transformation of two varieties of jute (Corchoruscapsularis L.). Plant Tissue Cult Biotechnol 18:7–16.
  • Sajib AA, Islam S, Reza S, Bhowmik A, Fatema L, Khan, H (2008). Tissue culture independent transformation for Corchorusolitorius. Plant Cell Tiss Organ Cult. 95:333-340.
  • Naher Z, Khatun A, Mahbub S, Alim MA, Siddique AS (2003). Influence of genotypes on plant regeneration from cotyledons of Corchoruscapsularis L. Biotechnology 2:44-51.
  • Ghosh M, Saha T, Nayak P, Sen SK (2002). Genetic transformation by particle bombardment of cultivated jute, Corchoruscapsularis L. Plant Cell Rep 20:936-942.
Institute Details

ICAR-Central Research Institute for Jute and Allied Fibres
Nilgunj , Barrackpore
kolkata - 700120
  • 033-22559875
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